Old_Schedule

Week
Topic
Tutorials etc
1
Jan 21,23
(HW0 )(Due Now) ; Internet Searching and Search Engines
Downloading compressed files
Windows GUI vrs Command line processing
( HW1 ):Due  )
2
Jan 26,28,30 
3
 Feb 2,4,6
Start Python GUI
( HW3: Due   ): Do exercises 2.3 and 2.4
Class Lecture on scripting in Python ( no ppt)
(HW4:Due ) :  functions1 
(HW5:Due  ) functions2
Download ThinkPython by  DowneyDownload Anaconda version of python More formulas
4
 Feb 9,11,13
mon:Exam Review & more functions 

   Wed:Exam I () 
Fri: Skip Chap 4
PythonConditionsCh5NEW
Download Python Libs
5
Feb 16,18,20
PythonIterationCh7
Homework 6 (due )
 PythonStringsCh8 

Movies:  Programming Importance 
Grace Hopper :  Letterman  (  history  )
(  Women in Computing  )

IPython byBrian Granger

6
 Feb 23,25,27  

 PythonStringsCh8
Homework 7 (Due )
 NCBIDenisovan’s
7 Mar 2,4,6
Excel Graphing/Python Graphing
ExcelHomework8
(  Due: Oct 13 Graphing Python Data  )
 Fun with Functions in Excel 
  Fun with Functions 2 Excel 
8  Mar 9,11,12
 PythonListsCh10
PythonMatplotlibCh10_6 (eegdata)
  Homework 9 (list practice)
List_Tutorial
pyplot_Tutorial
9  Mar 23,25,27
 Download paint.net on your home machine. 
Paint.net tutorial
 Image file formats,
File formats,
Animated Gifs and layers in Paint.net
Homework10: Image Modification (due wed)

 

  Inkscape is vector graphics
Paint.netis raster graphics Image format  tutorial 
10  Mar 30, Easter  Image Processing in PythonVector Graphics  Batch Image ProcessingBioPythonBook(pdf)
11  Apr 6,8,10 Exam Wednesday (exam review)
12
 April 13,15,17  BioPython (web page)BioPython Cookbook(html) Biopython Seq and SeqRecordBioPython Homework11PythonDictionaryCh11
NCBI Mycoplasma Genitalium See JN181159.1
13
 April 20,22,24  Systems Biology NetLogo Home Site  Papers using NetLogo,Santa Fe InstituteAgent Based ModelingSoftware
14
Apr 27,29,May 1 NetLogo Homework 12
15  May 4,6,8 CurveExpert (home) curveexpert, Biological Data sets
Bibliography Software(EndNote, Word, Zotero, Biblioscape, JabRef)
 International Data BaseBibword(works with Word)Comparison of RMS’s
16
COMPREHENSIVE FINAL
Wed May 13th @ 10:30 – 12:30

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